rs33064293 SNP Detail

Summary

• ID
  rs33064293
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:192099074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACAAAT TGGAAGACTT
  GGCACCAGGA GCCAAGCACA CAGTTGGCAT GCGCTGAGAG CAGGACTGAG CTCAGAGCCT
  CAACCTTGAC CCTGTGAGGC ACAGACAAAC AATACACAGC CCAGCGAGGC ACAGACAAGC
  AATGCACAGC CCAGCAAGGC ACATCCTGGC ATTGGGATTG GTTAGTCTAT AACCGGGCTT
  W
  GATGCCAAGC TACCTAGTGT GGAAGCCAAA ATATACTGTT TTCTGGCTGG GGAACATTGG
  GCTTCCCTGT GTCTCAGCTT TCTCATCTGA GCTGATATAA TTAAAAGCAC ATCCTAGAGT
  TTCTGTGAGG ACCAAGTTAG TAAACGCACA CCAAGCGCCT CTTGTTCTCT GTTCTTTCCG
  TTCTCTGTTC TCTCCATTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46767084	NES10656997	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33064293					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46767084	NES10656997	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192099074 () rs orientation: forward

Symbol	Name	Function Class
D1Mit510	DNA Segment, Chr 1 Massachusetts Institute of Technology 510	1126 bp proximal
Kcnh1	potassium voltage-gated channel, subfamily H (eag-related), member 1	within coordinates
Rr426339	regulatory region 426339	20 bp distal