rs33064509 SNP Detail

Summary

• ID
  rs33064509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:70953077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGC TAATCTCCAC CCCAGCTGGG
  Y
  GGGCTGCTCT GTCCCCTTGA GGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46229857	mCV22782724	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss145126675	ENSMUSSNP5189718	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss322700337	CHEV_8_73024326	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33064509					SNP	T	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70953077 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20464	CpG island 20464			430 bp proximal
Cpgi20465	CpG island 20465			1864 bp proximal
Crlf1	cytokine receptor-like factor 1			Intron
				Noncoding-Transcript-Variant
Gm63784	predicted gene, 63784			within coordinates
Rr664779	regulatory region 664779			1519 bp proximal
Rr664780	regulatory region 664780			1648 bp proximal
Tssr77746	transcription start site region 77746			1802 bp downstream
Tssr77747	transcription start site region 77747			689 bp upstream