rs33064734 SNP Detail

Summary

• ID
  rs33064734
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94393210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATACCACA CTCCCATAGC
  TGCTGCTCTT CTCTAGTCCA ATTCCCTTCC GCTCCTCTCC AGCCTCCCCT CTTAGCTCCT
  ATCGCTTCTC TACCCTCCCG ACCCCACCTC ATCTCTTGGG GTGTCGGGAC CCTGGTTTAG
  AGGCCCCACC TCTGCACAGC ACATGTTGAT ACCTGCTGTC CCTAAATGTT AGTGTTCGTT
  Y
  AGTTGCGTAT GAGCTGGAAT CCCAGCTGGA ACCTAACGAG TTGCTTCAAA CAGATGTGGG
  CCTCTCACAA CTCAAAAGTT CAGACATCAG ACGGAGAACT GAATCAGCTG GCTGGGCCCC
  TTCACCTCTG AGTCTAGGAC TCTCTAACAA TACTTGCCAA TATTCCGATT TAGATTTGAT
  TTGGCTCAGG CTAACGTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46766986	NES10733089	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33064734					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46766986	NES10733089	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94393210 () rs orientation: forward

Symbol	Name	Function Class
Celf3	CUGBP, Elav-like family member 3	within coordinates
Cpgi13484	CpG island 13484	1537 bp distal
D3Umi4	DNA segment, Chr 3, University of Michigan 4	380 bp distal
Gm65215	predicted gene, 65215	1684 bp upstream
Gm65218	predicted gene, 65218	931 bp upstream
Rr580639	regulatory region 580639	1695 bp distal
Rr580640	regulatory region 580640	1194 bp distal
Rr580641	regulatory region 580641	441 bp distal
Tssr30454	transcription start site region 30454	1568 bp downstream
Tssr30455	transcription start site region 30455	1552 bp downstream
Tssr30456	transcription start site region 30456	1495 bp downstream
Tssr30457	transcription start site region 30457	401 bp upstream
Tssr30458	transcription start site region 30458	429 bp upstream
Tssr30459	transcription start site region 30459	1787 bp upstream
Tssr30460	transcription start site region 30460	1830 bp upstream
Tssr34391	transcription start site region 34391	1675 bp upstream