rs33064790 SNP Detail

Summary

• ID
  rs33064790
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154522833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCAGGCA GCCTGCAGGA
  TGCTACAGAG ACAGTCGGAA CACGGAAGTC AGTCCAAAGT CATGTCCACC CAACCAACAA
  TCACTTCATG GTGGGGATGA ATCTGGGAAG TCAGGTGTGG AGTAACTTCT GTCACTGGGC
  AAACGCTACA GAGTAAAGCG TAATCTGACT AGTTCTAGCT GCTTCTTAGA TGAGGCTCTC
  R
  ATGAAACCGA CACAGATGTA GGGACTTGAG ATCCGAGGTG CACGAGGCTG CTGCTGGGTG
  GCATGGTTGA CCGCTTCACC GTATTTTTGT GAGCCCGGCT GCACTCTAAA CTGACGGCGG
  ACACCACCGG ATGACAGACA CACGAGTCAG TGCCGTGGGA TTGTCACTCG AAGAAGGACA
  GAGGGTCAGG TCTGTTCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46767329	NES10929604	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33064790					SNP	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46767329	NES10929604	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154522833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15440	CpG island 15440	19 bp proximal
Prdm16	PR domain containing 16	within coordinates