rs33064976 SNP Detail

Summary

• ID
  rs33064976
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192099215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCACAGCC CAGCAAGGCA
  CATCCTGGCA TTGGGATTGG TTAGTCTATA ACCGGGCTTT GATGCCAAGC TACCTAGTGT
  GGAAGCCAAA ATATACTGTT TTCTGGCTGG GGAACATTGG GCTTCCCTGT GTCTCAGCTT
  TCTCATCTGA GCTGATATAA TTAAAAGCAC ATCCTAGAGT TTCTGTGAGG ACCAAGTTAG
  Y
  AAACGCACAC CAAGCGCCTC TTGTTCTCTG TTCTTTCCGT TCTCTGTTCT CTCCATTCTC
  TGTTCTCTCT GCCTCCCTTA TTGTCCTCTG CAATTGCTGC TATGTTTTAT TTATTTTGCC
  TGTTACTTGA CTCTTCATAC TAGTCAGTAA GTTCGATGAG GACAGGCACT TTTTGTCTAG
  TTGTTCTTTA ACTACCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46767087	NES10656998	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33064976					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46767087	NES10656998	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192099215 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D1Mit510	DNA Segment, Chr 1 Massachusetts Institute of Technology 510			985 bp proximal
Kcnh1	potassium voltage-gated channel, subfamily H (eag-related), member 1			Intron
				Noncoding-Transcript-Variant
Rr426339	regulatory region 426339			161 bp distal