rs33065165 SNP Detail

Summary

• ID
  rs33065165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150881815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCACCAA CCTCGGAACC
  TAGCTGCCCG GTGACTTTAG CGCTTCACTT CTTGCCCACA GCCTTGTAGG AACTAGAGCC
  TTCATCTGAA CATCCTTTGA AAGATGCTTA GAAGAACTGA AGAGAAATGG GAGTCTCTGC
  AGTGTCTGCC GAATGGTTGT TCTTAAAAAT GTGTATTTGT GTTTCTGTGT ACGTGAGTGC
  Y
  TGCAGAGGAC AGACGAGGTC GTCCTGGAGC TGCAGTTGCG GCGGCTGTGA GCTGCCCACT
  GTGGGTGCTG GGAACTTGGG TCCTCTACAA GAGCAGTATG AGTTCTTAAC CAGTGAACCA
  TTTCTCCAGC TCCTTTCCCT CCATCTTTAC TCATTTTTCT GAAACTCTGC AGCCCAAGTC
  TTGTGTGCCT ATTAATTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J
ss45232534	mCV22554916	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss147953188	ENSMUSSNP4123631	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J
rs33065165					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150881815 () rs orientation: forward

Symbol	Name	Function Class
A130094D17Rik	RIKEN cDNA A130094D17 gene	within coordinates
Cpgi12417	CpG island 12417	19 bp distal
Nanp	N-acetylneuraminic acid phosphatase	516 bp upstream
Rr397387	regulatory region 397387	279 bp downstream
Rr567146	regulatory region 567146	508 bp distal
Rr567147	regulatory region 567147	426 bp distal
Rr567148	regulatory region 567148	within coordinates
Tssr20713	transcription start site region 20713	378 bp downstream
Tssr26734	transcription start site region 26734	492 bp upstream