rs33065564 SNP Detail

Summary

• ID
  rs33065564
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165585736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAAAGTAGTG TCCCTTAGAG AGAGAAAACT CCCAACACCT TAGTTACCAT GCAAAGCGAA
  AGCTCCTTAA ACATGCAGGG TTTCTCCAGC TCCCCACAGC TCCCAGCCCA GTCCTAGGGC
  AGCAGGCTCT TGTGCTCTGT GTACCTAATA CAGCCCACTA ACTCCCTGTA AATTAAGTTC
  TACTGACACA CAGCTATTCC CATGCACTTG CGTGCTGTCT GAAGTTGCTT TTGTGTTGCC
  CAAGAAGGGC TGAGGGGTTT AGTATGGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTAT
  K
  TATGTATAGT GTGTGTGTGT GTATGTGTGT GTGTGTGTGT GTGTGTGTTG CATCCTCTTG
  TGGTCTAGAG TGTTCACTCT GAAATCAGAT GGCTCAAGTT CAAAGCCAGC CTCATCCCCT
  TAGCTGTATC TGACAAGTTG CTTGGTCACC GTGTGCCTTC TCAGTTTCAA AGTTGGAATG
  TGCCCATTAA CGCGTCACAG GTATTTAGAA GGGGTCAGCT CTGTGGTAGG CAGATCTTAT
  AAAGGAAGTG AATGGCAGTG TGTCTTACAG AACTGAGTCT TAAACCACAT GTGGTAATGA
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45233025	mCV22645816	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33065564					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165585736 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12714	CpG island 12714			1250 bp distal
Eya2	EYA transcriptional coactivator and phosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr569990	regulatory region 569990			1582 bp distal
Rr569992	regulatory region 569992			1121 bp distal
Rr569993	regulatory region 569993			1031 bp proximal