rs33065686 SNP Detail

Summary

• ID
  rs33065686
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124142076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA ATTGGCCCAA ACTAGGTAGT
  R
  ATCCAAGGAC CCACCTGACC TAACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45732636	mCV23283978	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		G
ss60835807	NES16016881	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	G		G	G	G	G		G	G	G	G		G
ss149200758	ENSMUSSNP1858437	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss321672185	CHEV_5_124454022	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33065686					SNP	A	A	A	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835807	NES16016881	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124142076 () rs orientation: forward

Symbol	Name	Function Class
Gm37939	predicted gene, 37939	635 bp upstream
Hip1r	huntingtin interacting protein 1 related	813 bp downstream
Tssr48832	transcription start site region 48832	975 bp upstream
Tssr53284	transcription start site region 53284	1604 bp downstream
Vps37b	vacuolar protein sorting 37B	628 bp downstream