rs33065773 SNP Detail

Summary

• ID
  rs33065773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:145745304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCCCAGC AACCTCTGGT
  CCGGAAGTAG TTCTTTGTCC CACCCCATGG CGGCCGCGGG CGCGAGTACT TCCGGTAGTG
  CGGGCGCGGG GTCGCGCCGA GCGGGTTGGA GGCTGGCGGC GGCGCAATGA CCACGCTCCG
  GGCCTTCACC TGCGACGACC TGTTCCGCTT CAACAACATG TGAGTGAGGC ACGGCCGGCC
  Y
  CTGTCTTCGC GGCGCGGGAC GGGGTCAGCC TCGCGGGGCC GTGGGCCGGG TGGACGCTGC
  GCGGGCGCGC TGACCGGTGA CCTTGGCCGA GGCGCGGCGC TCCCGGTGCG CCCGGGATGA
  TGCGGAGCCG GGCTGGACAC CCCGCGCCCG CTCCCTGAGG CGGCCTCACT GCGGAGGGAG
  GGCGGGGAAG GAGCGCGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45233298	mCV23170951	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss320538610	CHEV_2_145729120	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33065773					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145745304 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12364	CpG island 12364	within coordinates
Gm74898	predicted gene, 74898	179 bp upstream
Naa20	N(alpha)-acetyltransferase 20, NatB catalytic subunit	within coordinates
Rr55740	regulatory region 55740	within coordinates
Rr374012	regulatory region 374012	1646 bp downstream
Rr397366	regulatory region 397366	51 bp downstream
Tssr20600	transcription start site region 20600	157 bp downstream
Tssr20601	transcription start site region 20601	84 bp downstream
Tssr20602	transcription start site region 20602	506 bp upstream