rs33065901 SNP Detail

Summary

• ID
  rs33065901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:192100561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACACACA CACACACACA
  CACACACATA TATATGATTT GCTTGTTTGT AGAATTAACC TGAACATGAC TACTTCTTGC
  TGACTGCACT GAACCAGTCC AGGCCAAGCA CCCCTCCTCA CCCTTCCCTT TGACTCTTGT
  GTTGCCACCC AGAGTCAAAG CCTCTAATCC CACTCTGGGT TTTCAGCTGA CATTTGCTCC
  Y
  TGATCTGTGC CACTGGTCAC AGTTTCACTT GGAAACTTCT CACATGCTTG GTATTTTCTC
  TGTATGATGC CTCCTAGGCC TCCTCTGACC TGGGTGAACT ACTGCCACAG AGCCTTTGTG
  TATGCTATCC TCCTGGAATG TTCTACTCCC ACAAGGTTCA CTCTGACATA CTCTAAAGCT
  GTCAGCTGAA ATAGCATCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss46767105	NES10657004	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs33065901					SNP	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46767105	NES10657004	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192100561 () rs orientation: forward

Symbol	Name	Function Class
D1Mit510	DNA Segment, Chr 1 Massachusetts Institute of Technology 510	137 bp distal
Kcnh1	potassium voltage-gated channel, subfamily H (eag-related), member 1	within coordinates
Rr426339	regulatory region 426339	1507 bp distal