rs33066754 SNP Detail

Summary

• ID
  rs33066754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:192100608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGAATTA ACCTGAACAT
  GACTACTTCT TGCTGACTGC ACTGAACCAG TCCAGGCCAA GCACCCCTCC TCACCCTTCC
  CTTTGACTCT TGTGTTGCCA CCCAGAGTCA AAGCCTCTAA TCCCACTCTG GGTTTTCAGC
  TGACATTTGC TCCTTGATCT GTGCCACTGG TCACAGTTTC ACTTGGAAAC TTCTCACATG
  Y
  TTGGTATTTT CTCTGTATGA TGCCTCCTAG GCCTCCTCTG ACCTGGGTGA ACTACTGCCA
  CAGAGCCTTT GTGTATGCTA TCCTCCTGGA ATGTTCTACT CCCACAAGGT TCACTCTGAC
  ATACTCTAAA GCTGTCAGCT GAAATAGCAT CTCCTCAGAG ACCTTTCCCA TGCCCGATTC
  CCTCCTAGCC CTGACTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss46767108	NES10657005	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs33066754					SNP	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46767108	NES10657005	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192100608 () rs orientation: forward

Symbol	Name	Function Class
D1Mit510	DNA Segment, Chr 1 Massachusetts Institute of Technology 510	184 bp distal
Kcnh1	potassium voltage-gated channel, subfamily H (eag-related), member 1	within coordinates
Rr426339	regulatory region 426339	1554 bp distal