rs33067327 SNP Detail

Summary

• ID
  rs33067327
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94442681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCACTCTCA ACAGCAATAG CAGCCACCCA AAAGGAACTG
  AAGCCCACCA CCAATAAGAT AAGAAGACAA GAGAGCACAG GATAGAACAA GAGAAGAGAA
  W
  AGCTACTAGG CCATCCAAAA GCTTCAGCCC AATACCAGTC TAACAAACAA GAAACCGGAA
  TCTCGGGAGG ACATGAGGAG GCAGGAGAAA CATCTCAACA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46767457	NES10730394	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33067327					SNP	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46767457	NES10730394	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94442681 () rs orientation: forward

Symbol	Name	Function Class
Gm43773	predicted gene 43773	within coordinates
Gm43774	predicted gene 43774	1237 bp downstream
Rr375397	regulatory region 375397	799 bp upstream
Rr580647	regulatory region 580647	952 bp distal
Rr580648	regulatory region 580648	1207 bp distal
Snx27	sorting nexin family member 27	Intron