rs33068599 SNP Detail

Summary

• ID
  rs33068599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102282548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGGCTG AACTGAGGGC
  GTCCGTGCGG GGGCGTCGGA GCGGGGGCGG GGGCAGAGAC CAATTGTAGG GCTTGGGAGT
  AGCGGCGTGT CCGGTGCTCT TGTTGGGAGT GGGATGATCC CCTTGTACCC TCCTTTGGAC
  TGTGTCTGAT CTGAAAACTT CAGACAGCCC CCCACCGCAG TACAGGCAGG GGTCAGGGTG
  R
  GTCCTTTTGC TACCTCACTT GGTGTGATTC ACGCTGGCTT ATGTAAATTC CCCGGAAAGT
  CTCGAGCCCT AGAGGATGTG ACTCCAGCTG GGAGAGGAAC CATCTGTAGC CAATGACTTT
  GAACCCATAA CCTCTCTCCA GATGCAAGCT CCCCGGTATG GATCATTGCA GGCTTGAGAG
  CAATGAGGTT AACTTCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45233594	mCV23728573	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss147112298	ENSMUSSNP81460	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss320437744	CHEV_2_102292360	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33068599					SNP	A	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102282548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	within coordinates
Fjx1	four jointed box 1	mRNA-UTR
Rr561694	regulatory region 561694	1443 bp distal
Rr561695	regulatory region 561695	859 bp distal
Rr561696	regulatory region 561696	286 bp proximal
Rr561697	regulatory region 561697	1240 bp proximal
Rr561698	regulatory region 561698	1367 bp proximal
Tssr25397	transcription start site region 25397	429 bp upstream
Tssr25398	transcription start site region 25398	388 bp upstream
Tssr25399	transcription start site region 25399	360 bp upstream