rs33068664 SNP Detail

Summary

• ID
  rs33068664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86989280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAAACTG TCTTTAAATA
  AATAAAACAA AACAAAACAA AACAAAACAG ATACCAAATC CACAAGCAGT CCAATCAATA
  CTGAAACGCT GGTTTTGCAA GCTACCGGGG TTTTAATCAT CTTAACGTTT CTTTCTCTTT
  CCATCTTTCC ACTTCTTTCC TGCCCTTCTT CAGCTTGAGC TTTCCTCGCC ACTGACGTCA
  R
  CCTTGTCCTC CTCACATCTC TCTTCCCACT GCAGGCCTCA TCCTCGAACC TTCCTCTCAC
  CCTTCTCAGG CTCCTCTCCC CTCACCATAT CACCCACAGC ATCACCCTTC TGCAGCCCAG
  TCAGGACCTT CCTGGTCCTC TAAAGTCAGC TGGGGGAGGG GCTTGCAGGC CTCAGGTTAG
  TCCTAGTTAA ACAGAGCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49438901	NES12806856	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33068664					SNP	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49438901	NES12806856	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86989280 () rs orientation: forward

Symbol	Name	Function Class
Gm28375	predicted gene 28375	within coordinates
Rr17956	regulatory region 17956	280 bp distal
Rr36781	regulatory region 36781	1424 bp distal
Rr36782	regulatory region 36782	238 bp distal
Rr371660	regulatory region 371660	1643 bp downstream