rs33068668 SNP Detail

Summary

• ID
  rs33068668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86987190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGTGGG GGGAGTAACC
  AGAACGCATT ATATAAATGC ATGAAATTGT CAAAGAACTA AGTTAATTAA AAAGCAGGAA
  GACCACCATC ACCAGCCTCG AGTAGAAGGC AGCTGTGTAT TCTAAGCCTG CAAATAGCAG
  TGTGAGTCTT TGCTCCGGGG CTCTGCTTCA AAAGAGATGG TAAAGTTAGT ACAATGTTAG
  R
  GAATTTCAGG AACCAACTGC GATCCTTTCC TCGATATCAT CAAAGGGGTG GAGAGAGAGA
  CCAACAACGC TCCATAGCAC AGGCCCATCA CTCATGTGCC TGAGAAGCTG GAGCCAAGGA
  TCTGTCTCTT CAAGACTCCA TCTCAATAAT GGTTCAGTGA CATTTTATGC CCATTGGTGA
  TAGCTAAACT AGCCCCATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49438905	NES12806906	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33068668					SNP	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49438905	NES12806906	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86987190 () rs orientation: forward

Symbol	Name	Function Class
Gm28375	predicted gene 28375	within coordinates
Rr17956	regulatory region 17956	1411 bp proximal
Rr36780	regulatory region 36780	1883 bp distal
Rr36781	regulatory region 36781	within coordinates
Rr36782	regulatory region 36782	1381 bp proximal
Rr371660	regulatory region 371660	within coordinates