rs33068670 SNP Detail

Summary

• ID
  rs33068670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86985549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGGGAC CATGGGGCGT
  GGTGAGGGAA AGGGGACTGT CTCTTGCCTT GGTGGTAGAT CAGTCTCCTT CCTGTTCTCA
  CACCAGAGCC CAGGGATTGA CTCAGGTGAT GAGAGAGTGG AGAAAGGATC TACACCCAGC
  CCCCCTCTAA GACCCCATAG CAGCCCCAGG ACATAAGTAC AGAAGAGCTG GGCTGGGCTA
  Y
  GCATTTGCTT TATACATTTG AGTCAGGAAG GTGGGCTTAT GGTACACAGC TGAGCAAGGA
  GGCAGATTTA GCTCATCTTT ATAAGAGGTC TCTGTAGGGG AGCAGTCTTA GGCTGCAGTT
  ATCCCAGAGG AGGAAGCTGA TAGCTTCTAC ATGGACTGTT AAAATTTGCA TTCAGACCAG
  GGAAAGGCTT TGCCACCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49438907	NES12806984	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33068670					SNP	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49438907	NES12806984	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86985549 () rs orientation: forward

Symbol	Name	Function Class
Gm28375	predicted gene 28375	within coordinates
Rr36779	regulatory region 36779	883 bp distal
Rr36780	regulatory region 36780	242 bp distal
Rr36781	regulatory region 36781	863 bp proximal
Rr371660	regulatory region 371660	318 bp upstream