rs33069980 SNP Detail

Summary

• ID
  rs33069980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127856531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTTGGTGA CTGATCAATA GAATATAGGT TTTACATTTG
  AGAGAAAATA GAGAATACTT ACCTTTATGT GTCCATCTAA TTTTAGTAAA CAACATAACC
  Y
  ATTTTCCTAA CCCCCCAAAA AACTGATTTA ATTCTTACAT ATGGCTAAAT CCTATATTAT
  TGTGTACTGT GACATACTTA GATCAAACGT CAAATCTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss45233611	mCV22732951	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss147549426	ENSMUSSNP5139669	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs33069980					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127856531 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	within coordinates
Rr397292	regulatory region 397292	9 bp upstream
Rr564632	regulatory region 564632	90 bp proximal
Tssr20037	transcription start site region 20037	572 bp upstream