rs33070597 SNP Detail

Summary

• ID
  rs33070597
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:83716092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTT GTGTGTACAA TGCCTCTTTA
  K
  TTAAAGACTT GGAATATCCA CAGAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss47752168	NES11290620	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs33070597					SNP	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47752168	NES11290620	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:83716092 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22096	CpG island 22096	309 bp proximal
Gm57060	predicted gene, 57060	within coordinates
Rr383689	regulatory region 383689	within coordinates
Rr683950	regulatory region 683950	within coordinates
Rr683951	regulatory region 683951	549 bp proximal
Rr683952	regulatory region 683952	690 bp proximal
Tssr86358	transcription start site region 86358	606 bp upstream
Tssr86359	transcription start site region 86359	645 bp upstream
Tssr90761	transcription start site region 90761	504 bp downstream
Ttk	Ttk protein kinase	650 bp upstream