rs33070599 SNP Detail

Summary

• ID
  rs33070599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:83716290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCG TTCCCCTGGA CCACACAGTC
  Y
  GCTAGGGGAG CTGGGTACCA TTGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss47752170	NES11290621	PERLEGEN	MM_PANEL2	f	SNP					C		T
ss136709524	ENSMUSSNP540070	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss323046422	CHEV_9_83727844	CHEVERUD	SCREENING_POP	f	SNP				C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs33070599					SNP	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47752170	NES11290621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:83716290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22096	CpG island 22096	111 bp proximal
Gm57060	predicted gene, 57060	within coordinates
Rr383689	regulatory region 383689	within coordinates
Tssr86358	transcription start site region 86358	408 bp upstream
Tssr86359	transcription start site region 86359	447 bp upstream
Tssr90761	transcription start site region 90761	306 bp downstream
Ttk	Ttk protein kinase	452 bp upstream