rs33070618 SNP Detail

Summary

• ID
  rs33070618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88747008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTAGAA ATTCAATGGA
  ATAGTCCTCT CTCTCTCTCT CTCCCTATGT AGATGGCCTT AAACATTTGA GTCTCCTATG
  TCCTCCTTCC AAGTTCCAGG ATTACAGGAA TGAGGCACTA TACCCTGCTT TCCTTTTGAG
  ACAGACTTCT TTTTTTTTTT TTTTTTTTTT TTTTTTCTGA GGCAGGGTTT CTCTGTGTAG
  Y
  CCTGGCTGTC CTGGAACTCA CTCTGTAGAC CAGGCTGGCC TCGAACTCAG AAATCCGCCT
  GCCTCTGCCT CCCGAGTGCT GGGATGAAAG GCGCGCGCCA CCACCGCGCA GCTGAGACAG
  AAACTTCTTA TGAAGGCCAG GGTGACCTCT AAATCTTGGC ACTCCTCCAG CCTCACCCTA
  CCCAGTACTG ATACATAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39490824	mCV25115703	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss146190952	ENSMUSSNP1763453	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33070618					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88747008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9640	CpG island 9640	612 bp proximal
Foxn2	forkhead box N2	1131 bp upstream
Rr340320	regulatory region 340320	192 bp proximal
Rr343689	regulatory region 343689	1208 bp distal
Rr405533	regulatory region 405533	783 bp upstream
Tssr146228	transcription start site region 146228	1134 bp upstream
Tssr146229	transcription start site region 146229	1162 bp upstream
Tssr146230	transcription start site region 146230	1491 bp upstream
Tssr146231	transcription start site region 146231	1944 bp upstream