rs33072027 SNP Detail

Summary

• ID
  rs33072027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57412740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGCC GCCTGTGTTC CTATCTTCAC
  Y
  CGCACCGAGC CTCGGCCAGC GCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39491134	mCV23460350	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss145810068	ENSMUSSNP6954544	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss325427557	CHEV_17_57245163	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33072027					SNP	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57412740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9396	CpG island 9396	within coordinates
Gm11110	predicted gene 11110	within coordinates
Rr529280	regulatory region 529280	405 bp distal
Rr529281	regulatory region 529281	within coordinates
Tnfsf9	tumor necrosis factor (ligand) superfamily, member 9	within coordinates
Tssr145375	transcription start site region 145375	319 bp downstream
Tssr145376	transcription start site region 145376	892 bp upstream
Tssr148901	transcription start site region 148901	176 bp downstream