rs33072576 SNP Detail

Summary

• ID
  rs33072576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154522675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCACCAG ATGTGGATGG
  GCCCCACCGG GAGCCTCATT CCACCAGGCA CTTGGAGAGA GACAGAAAGA ACAAAAGAAC
  AGTTGGCCAC TGTTCCTTTG GACCCCACTC TAATCCAGGA TGGCCAAACA GCAGAGGTGT
  TGTGATACAG AGCTGTGCAG GGCAGGCAGC CTGCAGGATG CTACAGAGAC AGTCGGAACA
  Y
  GGAAGTCAGT CCAAAGTCAT GTCCACCCAA CCAACAATCA CTTCATGGTG GGGATGAATC
  TGGGAAGTCA GGTGTGGAGT AACTTCTGTC ACTGGGCAAA CGCTACAGAG TAAAGCGTAA
  TCTGACTAGT TCTAGCTGCT TCTTAGATGA GGCTCTCAAT GAAACCGACA CAGATGTAGG
  GACTTGAGAT CCGAGGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46767320	NES10929601	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33072576					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46767320	NES10929601	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154522675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15440	CpG island 15440	177 bp proximal
Prdm16	PR domain containing 16	within coordinates