rs33073090 SNP Detail

Summary

• ID
  rs33073090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52210571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTGCAGGGTG GTAGGATTTG CTGAATGCAA TAGGATCAGG AGTTCAAGGC CAGCCTGGAA
  TATGTGATTT TTTAGCCAGG TGGTGATGGT ATGCCTTATT AATCCCAGCA CTCAGCAGGC
  AGAGGTAGGT GGATCTCTGT GAGTTTGAGG CCAGCCTGAT CTACACAGTG AGTTCCAGGA
  CAGTCAGGGG TAAATAGTGA GACCCTGTCT CAAAGTTCTC ACCCTCCAAA AAATATTAGA
  AAGAAAGAGA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAGAGAGA GAGAGAGAAA
  R
  AGAGAGAAAG AGAGAAAGAG AGAAAGAAAG AAAGAAAGAA AGAAAGAGAA GAGAGAGAGA
  AAGAAAGGAA GAAAGGAACA AAGAAAGAAG GAAAGAAAGA AAAGAAGGAA AAGAAAACCT
  TGCTTTGACC CAAGAATCAA GTGACTTTCA CAAAATAGTT TGGAGATTGG GACAGAAATG
  AGATGACCTG GGACATGTTC AGGTCTCTTC CAGAGGGACA GAACTAGCTT GAGCTCATCT
  TTTGAAAACC AAATAGGCAT TCCTATTTTC AAGTAATTGT GAAGATGCCT GGAGTAAGAC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39491149	mCV25232044	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs33073090					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52210571 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	within coordinates
Rr370289	regulatory region 370289	536 bp upstream
Rr405357	regulatory region 405357	252 bp upstream
Tssr145177	transcription start site region 145177	662 bp upstream
Tssr148690	transcription start site region 148690	377 bp downstream
Tssr148691	transcription start site region 148691	407 bp downstream