rs33074479 SNP Detail

Summary

• ID
  rs33074479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125922795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATAGTAG GGCGTGGTGG
  CGCACGCCTT TAATCCCAGT ACTCGGGAGG CAGAGGCAGG CAGATTTCTG AGTTTGAGGC
  CAGCCTGGTC TACAAAGCCC AGGACAGCCA GGGCTATACA GAGAAACCCT GTCTCGAAAA
  AACAAAAACA AAAACAAAAA CAAAAACAAA AACAAAAAAA AGCTGCTCTG ATGTTCTAGC
  Y
  ATGGGCTCCA TCATGTTGCA TTTTTCTCCC AGGTGAACTC TGCAAAATAG CTCAAGACAT
  CATTCTCCTG CAATGACCAG ACACCACAAC ACTTCTTCAT ACGAGATATC ACGTCTGACT
  AACTCTGACA ACCCATAAAT GGCTACTCAG GAGCATTCTC AGGATCTTCC TGGACAATGT
  TAAGGTGTCT TGGTTTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47253172	NES11569147	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33074479					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47253172	NES11569147	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125922795 () rs orientation: forward

Symbol	Name	Function Class
D7Csu3	DNA segment, Chr 7, Central Connecticut State University 3	1729 bp proximal
D7Csu4	DNA segment, Chr 7, Central Connecticut State University 4	1299 bp proximal
Rr153599	regulatory region 153599	6 bp proximal
Rr381445	regulatory region 381445	83 bp upstream
Tssr69016	transcription start site region 69016	330 bp upstream
Tssr74630	transcription start site region 74630	1295 bp downstream