rs33075490 SNP Detail

Summary

• ID
  rs33075490
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125923132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGCTAC TCAGGAGCAT
  TCTCAGGATC TTCCTGGACA ATGTTAAGGT GTCTTGGTTT AAAATTGAGT CGGGTCTAAA
  GTTGGACAGT GTAAAATACA TTGTGGGAAA TGGCACGGGT TCTTTCTGTA GCGTTTTAAG
  TAGTACCTAT GTCAATGCTC GCTTTGTCCA GCAGGTGGCA GCGTCTACCC TTTCTGGACC
  S
  GGTCTTCTCT CTGAAAGCGA GTTTTAGAAG CAGAGTTCCT GAGATGTACA TGTACATGTA
  TTTTTTGAAG AAATTTTCAA AGATGATGCA GCCCAGGGCG GTGTAATCAG ACGTTATAAA
  GCTACAGGAC ATTTCAACAT GAGACATCAC AGAAACCGGA TGAAACCATC CTCTTTATCA
  TGCTGCTGAG AGTCTCCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47253184	NES11569151	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33075490					SNP	G	G	G	G	G	G	C	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47253184	NES11569151	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125923132 () rs orientation: forward

Symbol	Name	Function Class
D7Csu3	DNA segment, Chr 7, Central Connecticut State University 3	1392 bp proximal
D7Csu4	DNA segment, Chr 7, Central Connecticut State University 4	962 bp proximal
Rr153599	regulatory region 153599	within coordinates
Rr153600	regulatory region 153600	1669 bp proximal
Rr381445	regulatory region 381445	within coordinates
Tssr69016	transcription start site region 69016	within coordinates
Tssr74630	transcription start site region 74630	958 bp downstream