rs33076423 SNP Detail

Summary

• ID
  rs33076423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125923988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACTGTAG CCCTGGTTGT
  CCTAAATCCA CACCTGGAAG CCATTTTAAC TTACCTAATG GCGCATTTGA GGTGGAGAGG
  GGCTTATGCA GCCATCTTCT TCACAGAGAC ACATACAGAA AACTATGTCT TCTCCAGGTT
  ACCTGCAGTA TTTCCCTGTG GACCAGCTAC CCCTCAGCAG TGGCTAAGAT TCTGTAGAAA
  R
  CCCAGTGAAC TTACTAGGAT TCTATCCAGA GCCTGGGGAG AGATTACATA CAAGAGTGTG
  GTCCATCGCA GAGCAGCTGC ATCACTGGAA AGTCTTCCCA GCATAAGTGA CAACTTCCCC
  ACAGCTGCCC CCTCAATCTT GTGTCCTGTG TTTACTCAGG CTCCTCCAGA GAGCAGTGGC
  GTTTCCTGCA GTTAGGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47253199	NES11569088	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33076423					SNP	A	A	A	A	A	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47253199	NES11569088	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125923988 () rs orientation: forward

Symbol	Name	Function Class
D7Csu3	DNA segment, Chr 7, Central Connecticut State University 3	536 bp proximal
D7Csu4	DNA segment, Chr 7, Central Connecticut State University 4	106 bp proximal
Rr153599	regulatory region 153599	588 bp distal
Rr153600	regulatory region 153600	813 bp proximal
Rr381445	regulatory region 381445	within coordinates
Tssr69016	transcription start site region 69016	824 bp downstream
Tssr74630	transcription start site region 74630	102 bp downstream