rs33076640 SNP Detail

Summary

• ID
  rs33076640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4266321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGGTCTTCAT AGGGGCCCTC TCTCCTTTCC CAGAAGCTGG GGGCCTGTTG GCTTCAGGGA
  GAAGACAAAA ATCAGTGGTA CTTCTGAAAA AGAGGAGTAT CTAAGAAGGA AGAGAGAAGG
  TAAGCAGAGT GCAGATGGAG GTCACAAATA AAGCTGAGTA CCTGGGCTAC GAGGACCTGC
  CCCAGCACTG CGCGCTGGTG CCCCGTGAAT AGTGGTCTGT GGAAGAGCTG CTTTGCTGGT
  CTGTGGAAGA GCTGCTTTGC TGGTCTGTGG AAGAGCGGCT TTGCTGGTCT GTGGAAGAGC
  R
  GCTTTGCTGG TCTGTGGAAG AGCGGCTTTG CAGACGCCTG GGGCTCGCTC CACCAGGGAC
  CTTCGCCCCA TAGCTCCGTT TGCTTCCAAG ACTCGAAGGG CAGCAGTGGT CACAGGGGGA
  GGAGGTCGAG CGGACCCAGA AGGAGGCCTA GGGGTCAGAA GGCCAGGGGG TCGTGAAGAC
  GGCATTCGCG GGGCAGTTCC TGATTTGACG CTATCCCTCT TGTCCATACC GCACCTAATG
  AGGAAGACAG GAGGCTTGGT ATCCCAGGTC CTGAACCAAT CACTACAAAC CATCCTGAAG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss46231994	mCV23159910	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss148555648	ENSMUSSNP4362013	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs33076640					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4266321 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20045	CpG island 20045	1366 bp distal
Cpgi20046	CpG island 20046	34 bp proximal
Gm64374	predicted gene, 64374	783 bp downstream
Prr36	proline rich 36	within coordinates
Rr658993	regulatory region 658993	981 bp proximal
Tssr80248	transcription start site region 80248	1964 bp upstream
Tssr80249	transcription start site region 80249	1941 bp upstream
Tssr80250	transcription start site region 80250	1836 bp upstream
Tssr80251	transcription start site region 80251	1738 bp upstream
Tssr80252	transcription start site region 80252	1697 bp upstream
Tssr80253	transcription start site region 80253	1591 bp upstream
Tssr80254	transcription start site region 80254	1531 bp upstream
Tssr80255	transcription start site region 80255	310 bp upstream
Tssr80256	transcription start site region 80256	658 bp downstream
Tssr80257	transcription start site region 80257	697 bp downstream
Tssr80258	transcription start site region 80258	792 bp downstream
Tssr80259	transcription start site region 80259	812 bp downstream
Tssr80260	transcription start site region 80260	858 bp downstream
Tssr80261	transcription start site region 80261	940 bp downstream
Tssr80262	transcription start site region 80262	1145 bp downstream