rs33077626 SNP Detail

Summary

• ID
  rs33077626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105277760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGAGAAT ATGGCCCAGG
  AAAATCAACC AGGGTCGTGG TCCAGTTTTG GAAACTAAAC CATGTCTCTA GTTAGAGTCC
  TACAGGACTT ACTAAGCCCA ATACCTATGA ACATTTGTGT GCATGTTTTC CCACTAATCA
  GGATTTATAA ACATGGGAAT TTCCTTAGGA TAGATCATTG GAGCCTGGTG CAAAATGGAG
  R
  ACTTCTTTTA CCAGCAGGGC TTCCCCTTCC CTGACATTGT CTGGGGATCC CTACTCCCCA
  CACCCTCTAC CTGGGGAAGG TTGAGCAGTC CTTGGCAGAC CTAAAAAATT CCTCCCCCAC
  CCCATCAAAA ACCCCCCAGC AAGTACCTGG GATTCCTGGA CTGCCTCTCC ATGCAAATGC
  AACAATCAAA GCAATTTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45733948	mCV23374766	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33077626					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105277760 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	within coordinates
Tssr1571	transcription start site region 1571	1878 bp downstream
Tssr52267	transcription start site region 52267	1433 bp downstream
Tssr52268	transcription start site region 52268	1478 bp downstream
Tssr52269	transcription start site region 52269	1540 bp downstream
Tssr52270	transcription start site region 52270	1721 bp downstream
Tssr52271	transcription start site region 52271	1844 bp downstream
Tssr52272	transcription start site region 52272	1903 bp downstream
Tssr52273	transcription start site region 52273	1973 bp downstream