rs33078738 SNP Detail

Summary

• ID
  rs33078738
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115569568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGGTATTT ATGAACAGGG AGCTAGCTTG CAAGGAAATT
  GGAAATAGGG GGAAAAAAAG TGCTCTGTCG ACCAGATCTT AGGAGACCCT GCCTGTTTGG
  Y
  ATTCAAACTC CTGGAACATT TTGCTTCTTT CCCAGTGTTC CCAGTGTCTT GGACCCTGCA
  GGGGGCGCTG GCGGAGGCCA GCTCAGGGGT TCCAGAAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45734525	mCV25227311	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss149124664	ENSMUSSNP1556664	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss321654898	CHEV_5_115881518	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33078738					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115569568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16370	CpG island 16370	547 bp distal
Msi1	musashi RNA-binding protein 1	within coordinates
Rr618243	regulatory region 618243	1900 bp distal
Rr618244	regulatory region 618244	51 bp proximal
Tssr48228	transcription start site region 48228	1992 bp downstream
Tssr48229	transcription start site region 48229	1974 bp downstream
Tssr48230	transcription start site region 48230	1941 bp downstream
Tssr48231	transcription start site region 48231	1896 bp downstream
Tssr48232	transcription start site region 48232	1826 bp downstream
Tssr48233	transcription start site region 48233	1802 bp downstream
Tssr48234	transcription start site region 48234	1775 bp downstream
Tssr48235	transcription start site region 48235	1739 bp downstream
Tssr48236	transcription start site region 48236	1517 bp downstream
Tssr48237	transcription start site region 48237	1173 bp downstream
Tssr48238	transcription start site region 48238	880 bp downstream
Tssr48239	transcription start site region 48239	127 bp downstream
Tssr48240	transcription start site region 48240	498 bp upstream
Tssr48241	transcription start site region 48241	511 bp upstream
Tssr52797	transcription start site region 52797	2000 bp upstream