rs33079542 SNP Detail

Summary

• ID
  rs33079542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173419503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGGGGAA AGGCCTGTCC
  TCGATTTGGT AGTGGTAGGG TCTACTAAGA CCTAGTTTTG TTTCAAGAGT GAAGTCTTAG
  GTAGACATGG TTGTCTTGGG GGCCTGGGCT CCCTAAGGAA GACAAGAGGC TGCCCAGAAG
  GTCTTGTGGT TTTGAGAGTT GAGGTTCTGA GCAGCCTGGA CTTGCTCAAG GTTGGCAGAC
  Y
  ACAGCCTGCG ACAGACACAA TGCTTGTGAA TGAGGTTCAC CTATATATTT GGGGTTAATA
  AGACACCCAC CCATGTGCTT GGAGTTAGGA GCCCTTGAGT GGCCAGCGCT CCAAGGGGCC
  GTTCTAGATG GGGCTCGAGT GGTTGGGTTT GACTTGGTCA CCTTGGATTC TCTGGCAGTT
  ACGAGTGTCA TGGGGACCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45234254	mCV22939393	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss148335723	ENSMUSSNP4348659	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320625288	CHEV_2_173403211	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33079542					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173419503 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	within coordinates
Cpgi12846	CpG island 12846	79 bp proximal
Gm74867	predicted gene, 74867	within coordinates
Gm74874	predicted gene, 74874	229 bp upstream
Rr571985	regulatory region 571985	65 bp proximal
Rr571986	regulatory region 571986	478 bp proximal
Tssr27995	transcription start site region 27995	461 bp downstream
Tssr27996	transcription start site region 27996	478 bp downstream
Tssr27997	transcription start site region 27997	493 bp downstream
Tssr27998	transcription start site region 27998	505 bp downstream
Tssr27999	transcription start site region 27999	590 bp downstream