rs33079740 SNP Detail

Summary

• ID
  rs33079740
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180829213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACCTAGCATT GCAGAAGGTA GGGTGGATTC TTGCTCCGCT CGGGGTGGAG TCTAATAGGG
  AAGGGCGGGA CCACTTCGTG CTACTGCTGG TCTATCAGGG GAGCTCAAAA GTCTCATGGG
  TGGGCCCGCT GTGAAGCGGG AGGGGCTTTG ACGCGCGCCC CGCCTCCCAG TGGTGCGTCT
  TTTGCGGTGC AGGAAAGCTA CTAAGTACGC GCGTGCGCAT AGCGCGCGTG GGTCCTAAAG
  TGGTGTTTCG TGGGTTATCT TTGCAAATGG GCTCCGCGGC CTAGCGCCCT GGTGGCCTAA
  M
  AACGAAGCCT GCAAGGAAGG GGTTCTCCGC CGAGGTGAGG GCAGTGACGA AGGCAGCCGG
  CGGTGGGGTG GGGGAGGCGC GTCTTCTTGG GGCCAGGAGC AGACAAAGCC CCTTTGTCTC
  ACCACGCAGC CGGACCGGGC TGGTTGGAGC CGCTTGGAAA CCTGGCACTG TCAGGACCCG
  GGAGACTCGG GGAACCCTCC GGTGTGCGGT GACCAGGGCC CACATTCTGC TCTCGTCTCC
  GCAGCGCCTC GGTCCTGAAG CATGGCAGCC ATCCCTTCCA GCGGCTCGCT CGTGGCTACC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45234712	mCV22913088	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33079740					SNP	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180829213 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	within coordinates
Cpgi12916	CpG island 12916	within coordinates
Gm75115	predicted gene, 75115	within coordinates
Gm75119	predicted gene, 75119	1714 bp upstream
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	within coordinates
Rr374383	regulatory region 374383	within coordinates
Rr572939	regulatory region 572939	74 bp distal
Rr572940	regulatory region 572940	123 bp distal
Rr572941	regulatory region 572941	within coordinates
Rr572942	regulatory region 572942	283 bp proximal
Rr572943	regulatory region 572943	1224 bp proximal
Rr572944	regulatory region 572944	1725 bp proximal
Tssr22287	transcription start site region 22287	73 bp downstream
Tssr22288	transcription start site region 22288	1 bp downstream
Tssr22289	transcription start site region 22289	89 bp upstream
Tssr22290	transcription start site region 22290	177 bp upstream
Tssr22291	transcription start site region 22291	216 bp upstream
Tssr22292	transcription start site region 22292	359 bp upstream
Tssr22293	transcription start site region 22293	457 bp upstream