rs33080049 SNP Detail

Summary

• ID
  rs33080049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81114610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACTTCT CAGAGTATTG
  CTGAACTCAT AAAAATCTAA ATATCAAGCC AACTTGTATC TAAGTACATA TATATGTTTA
  CTTCTTACTC TGAGCTAATT TTACATTTTT TGAAAACTTG CAGAACAAGT ACAGAAATAT
  CCTGCCAGGA ATACCATATC TCCTACATGC CTTCTTCAAG TCTCTTAATT TTGGTATGTA
  Y
  ATAACTTCGG GATAATTTTC AAAACACAGA AAAAATTACA TTGCCATACT ACTATCAACG
  AAACAATCTT ACCCAAATCC CACCACATGA TATTTACAAG GAGAAGCAAT TGCTCAAGAT
  GTACAAAATT AGTAGACTCC AGACTCCAGT AGAATTTTCT TCATAATGAG TTGACCATTT
  CTTCATTTGA TTCCTAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39491758	mCV22308207	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss146076326	ENSMUSSNP776927	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33080049					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81114610 () rs orientation: forward

Symbol	Name	Function Class
Gm33596	predicted gene, 33596	50 bp downstream
Rr393005	regulatory region 393005	1871 bp downstream
Rr393006	regulatory region 393006	395 bp upstream
Rr531544	regulatory region 531544	903 bp proximal
Rr531545	regulatory region 531545	1934 bp proximal