rs33080541 SNP Detail

Summary

• ID
  rs33080541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126047686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTTCCAGA TGCCTTCTAT TTCCCCTCCT CAGACTCCAT
  GCAGAGTCTC CCCCCACACA CACACCCAGC ATGCGTGGGG ACACTCAGAG CCTTGACCCG
  R
  GCAGCCCTCT GCGACTTCTC ACCATGGCTG TGATCTCATC GTAGGACTGC AGGTACTCCA
  CAATCTTGGA CTTGTGTGAG GGCTCCACAC GAGCAAAGCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47254135	NES11563287	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33080541					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47254135	NES11563287	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126047686 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	Intron
Tssr2394	transcription start site region 2394	874 bp upstream
Tssr69023	transcription start site region 69023	600 bp downstream
Tssr74664	transcription start site region 74664	1926 bp upstream
Tssr74665	transcription start site region 74665	1600 bp upstream
Tssr74666	transcription start site region 74666	1541 bp upstream
Tssr74667	transcription start site region 74667	1513 bp upstream
Tssr74668	transcription start site region 74668	1310 bp upstream
Tssr74669	transcription start site region 74669	1296 bp upstream
Tssr74670	transcription start site region 74670	1040 bp upstream
Tssr74671	transcription start site region 74671	1019 bp upstream
Tssr74672	transcription start site region 74672	1002 bp upstream
Tssr74673	transcription start site region 74673	863 bp upstream
Tssr74674	transcription start site region 74674	835 bp upstream
Tssr74675	transcription start site region 74675	821 bp upstream
Tssr74676	transcription start site region 74676	612 bp upstream
Tssr74677	transcription start site region 74677	569 bp upstream
Tssr74678	transcription start site region 74678	548 bp upstream
Tssr74679	transcription start site region 74679	528 bp upstream
Tssr74680	transcription start site region 74680	510 bp upstream
Tssr74681	transcription start site region 74681	484 bp upstream
Tssr74682	transcription start site region 74682	473 bp upstream
Tssr74683	transcription start site region 74683	270 bp upstream
Tssr74684	transcription start site region 74684	168 bp upstream
Tssr74685	transcription start site region 74685	132 bp upstream
Tssr74686	transcription start site region 74686	80 bp downstream
Tssr74687	transcription start site region 74687	134 bp downstream
Tssr74688	transcription start site region 74688	238 bp downstream
Tssr74689	transcription start site region 74689	307 bp downstream
Tssr74690	transcription start site region 74690	728 bp downstream
Tssr74691	transcription start site region 74691	771 bp downstream
Tssr74692	transcription start site region 74692	1638 bp downstream
Tssr74693	transcription start site region 74693	1664 bp downstream
Tssr74694	transcription start site region 74694	1787 bp downstream
Tssr74695	transcription start site region 74695	1988 bp downstream