rs33081309 SNP Detail

Summary

• ID
  rs33081309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85392488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT TCACAGAGAG CATGTGGGAA
  R
  CAGTACAGGT GAAGTCCGAA TAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss46232600	mCV24192594	ABI	CRAMUS_MOUSE	f	SNP	G	G			A		G
ss60644238	NES16270071	PERLEGEN	MM_PANEL2	f	SNP			G	G		G		G		A		G
ss145391657	ENSMUSSNP6976325	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G
ss322751247	CHEV_8_87189758	CHEVERUD	SCREENING_POP	f	SNP									G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs33081309					SNP	G	G	G	G	A	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644238	NES16270071	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85392488 () rs orientation: forward

Symbol	Name	Function Class
4930447I22Rik	RIKEN cDNA 4930447I22 gene	833 bp upstream
Cpgi20703	CpG island 20703	1348 bp distal
Cpgi20704	CpG island 20704	288 bp distal
Gm26664	predicted gene, 26664	within coordinates
Gm50464	predicted gene, 50464	within coordinates
Rr368565	regulatory region 368565	1659 bp downstream
Rr368566	regulatory region 368566	701 bp downstream
Tssr2627	transcription start site region 2627	721 bp downstream
Tssr78425	transcription start site region 78425	1621 bp downstream
Tssr78426	transcription start site region 78426	1602 bp downstream
Tssr78427	transcription start site region 78427	1294 bp downstream
Tssr82110	transcription start site region 82110	1904 bp upstream