rs33081667 SNP Detail

Summary

• ID
  rs33081667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126048208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACATGCC CACAACACCA
  ACAAACGTCA GGTCCATCTG GAAAGATGGT GACATGTTGG TCAGGGAGGA ATTTGGGACA
  GACAGGAGGA AGTTCAGAGG AAGATGGGCA GTACTGTTGG TGACGCTGGG GCCTGCTGCC
  TTGGTACCTG GTGTTGGACA TCAGTAGGAC CTTGGAAGCA CAGGGCCAGA AAACATAATT
  Y
  CTGCAATCCT TATAATGCCT GCCCTGCATA GACTGGCAGT GCCAAGGCCT GCTGCAAAAA
  GCCTGCCGAG TCAGAAAGTG ATGGCACACA CCTCTGATCC CAGCACTTGG GAGGCATAGG
  CAGGTAGATC TCTGTGAATC CGAGGCCAGC CTGATCTACA AAGTGAGTTT CTGGACAGCC
  AGAGCTGTTA TACAGAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47254141	NES11563290	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33081667					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47254141	NES11563290	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126048208 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Tssr2394	transcription start site region 2394	1396 bp upstream
Tssr69023	transcription start site region 69023	1122 bp downstream
Tssr74668	transcription start site region 74668	1832 bp upstream
Tssr74669	transcription start site region 74669	1818 bp upstream
Tssr74670	transcription start site region 74670	1562 bp upstream
Tssr74671	transcription start site region 74671	1541 bp upstream
Tssr74672	transcription start site region 74672	1524 bp upstream
Tssr74673	transcription start site region 74673	1385 bp upstream
Tssr74674	transcription start site region 74674	1357 bp upstream
Tssr74675	transcription start site region 74675	1343 bp upstream
Tssr74676	transcription start site region 74676	1134 bp upstream
Tssr74677	transcription start site region 74677	1091 bp upstream
Tssr74678	transcription start site region 74678	1070 bp upstream
Tssr74679	transcription start site region 74679	1050 bp upstream
Tssr74680	transcription start site region 74680	1032 bp upstream
Tssr74681	transcription start site region 74681	1006 bp upstream
Tssr74682	transcription start site region 74682	995 bp upstream
Tssr74683	transcription start site region 74683	792 bp upstream
Tssr74684	transcription start site region 74684	690 bp upstream
Tssr74685	transcription start site region 74685	654 bp upstream
Tssr74686	transcription start site region 74686	398 bp upstream
Tssr74687	transcription start site region 74687	362 bp upstream
Tssr74688	transcription start site region 74688	277 bp upstream
Tssr74689	transcription start site region 74689	206 bp upstream
Tssr74690	transcription start site region 74690	206 bp downstream
Tssr74691	transcription start site region 74691	249 bp downstream
Tssr74692	transcription start site region 74692	1116 bp downstream
Tssr74693	transcription start site region 74693	1142 bp downstream
Tssr74694	transcription start site region 74694	1265 bp downstream
Tssr74695	transcription start site region 74695	1466 bp downstream