rs33081669 SNP Detail

Summary

• ID
  rs33081669
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126048737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGAATTC ATGAATTCCT
  GACCAGGGAG GGCCAGCCCT GGCTGCATCA TGAATTCACG ATCAGGGCCA GCCCTGGCTA
  CATTACAAAA CTCTATCTGA AAAACAACCA CAGCAAAAAC CAAAACAAAG AAAAAATAGA
  AAAAGAAAAG CTACATATTA ACACAGTGGC TTGTGTCTCC TAGCAGAGCC CTTGTTGGCC
  M
  GTCACTCTGA GCACACCCTG TTACCTGGCA GGCCATAATC TCCTATAAAT GCAGGCAGTG
  AGCTTTGGGG GTTATTCAGA GTCCACAGCA AGAAGTGCAT CAGTTGTCTC AGACACTGCA
  CCGGGTGACA GTGATTCCCA CAGAGCACGG TTAATGCAGA CTGTGGCTGC AGGTGCGGCT
  GGGACGGAGC ACACCTGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47254144	NES11563129	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33081669					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47254144	NES11563129	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126048737 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Tssr2394	transcription start site region 2394	1925 bp upstream
Tssr69023	transcription start site region 69023	1651 bp downstream
Tssr74673	transcription start site region 74673	1914 bp upstream
Tssr74674	transcription start site region 74674	1886 bp upstream
Tssr74675	transcription start site region 74675	1872 bp upstream
Tssr74676	transcription start site region 74676	1663 bp upstream
Tssr74677	transcription start site region 74677	1620 bp upstream
Tssr74678	transcription start site region 74678	1599 bp upstream
Tssr74679	transcription start site region 74679	1579 bp upstream
Tssr74680	transcription start site region 74680	1561 bp upstream
Tssr74681	transcription start site region 74681	1535 bp upstream
Tssr74682	transcription start site region 74682	1524 bp upstream
Tssr74683	transcription start site region 74683	1321 bp upstream
Tssr74684	transcription start site region 74684	1219 bp upstream
Tssr74685	transcription start site region 74685	1183 bp upstream
Tssr74686	transcription start site region 74686	927 bp upstream
Tssr74687	transcription start site region 74687	891 bp upstream
Tssr74688	transcription start site region 74688	806 bp upstream
Tssr74689	transcription start site region 74689	735 bp upstream
Tssr74690	transcription start site region 74690	319 bp upstream
Tssr74691	transcription start site region 74691	259 bp upstream
Tssr74692	transcription start site region 74692	587 bp downstream
Tssr74693	transcription start site region 74693	613 bp downstream
Tssr74694	transcription start site region 74694	736 bp downstream
Tssr74695	transcription start site region 74695	937 bp downstream