rs33082324 SNP Detail

Summary

• ID
  rs33082324
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126772483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGGAGCAG TCTAGAGAAA GCCTACCATG CTATAAAAAG
  AGCTTATCAA GGCCATTCTG GGGAGAGAAC AGAATAGCGG GATGCTGCCC TCAATGCAGA
  Y
  AGTAAAAAAG CAGGCTCATG AATTTGCAGA CGGAATGATG ACTCTATCTG GAATTAGGCT
  AAATGCACCA TGCTGTACCA TTCTGGTAAA GAACTTGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45234184	mCV22628412	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss147514222	ENSMUSSNP261955	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320498555	CHEV_2_126756299	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33082324					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126772483 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr564422	regulatory region 564422			1766 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr19974	transcription start site region 19974			1533 bp downstream
Tssr26084	transcription start site region 26084			1338 bp downstream