rs33082568 SNP Detail

Summary

• ID
  rs33082568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126049129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGCCTG CCCTGGGTTC
  CAGCCCCAGC ACCACACTGG GCAGCACTGG ACTAAACGAC CCTGTCTTCT TTTCTTGGCT
  TTTGTTTTCG TTTCTGAAAC GGAGCCTTGC TTTCGAGGCT GGCCTATCTC AGTCTACTGA
  GGGCCGAGCT ACTGAGTCTG ACTGGGCTAG GTGTTTCATG AAACCGTCAC ACCTTCATGC
  Y
  TTGTGATTTG GGGATCCACA GGACACAGCC GTTCATCTGA CACACTGTAC TAGGGAATGA
  GAATCATGGC AGCAGGCAAG AGGGAGCCAC TGGGGAAAAC TGTCTCAACA CAAGTCCCAG
  GACAAGAAGA GACCCTTCGT GGCTCACCTC ATACTCCATG AACTTGGCTG AATCATCCAG
  AACCATCTCC TCGCGTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47254153	NES11563132	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33082568					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47254153	NES11563132	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126049129 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Tssr74678	transcription start site region 74678	1991 bp upstream
Tssr74679	transcription start site region 74679	1971 bp upstream
Tssr74680	transcription start site region 74680	1953 bp upstream
Tssr74681	transcription start site region 74681	1927 bp upstream
Tssr74682	transcription start site region 74682	1916 bp upstream
Tssr74683	transcription start site region 74683	1713 bp upstream
Tssr74684	transcription start site region 74684	1611 bp upstream
Tssr74685	transcription start site region 74685	1575 bp upstream
Tssr74686	transcription start site region 74686	1319 bp upstream
Tssr74687	transcription start site region 74687	1283 bp upstream
Tssr74688	transcription start site region 74688	1198 bp upstream
Tssr74689	transcription start site region 74689	1127 bp upstream
Tssr74690	transcription start site region 74690	711 bp upstream
Tssr74691	transcription start site region 74691	651 bp upstream
Tssr74692	transcription start site region 74692	195 bp downstream
Tssr74693	transcription start site region 74693	221 bp downstream
Tssr74694	transcription start site region 74694	344 bp downstream
Tssr74695	transcription start site region 74695	545 bp downstream