rs33083055 SNP Detail

Summary

• ID
  rs33083055
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165435495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATACAAG AGTCTCGCCG
  CTGAGCTCTG GATGAGAAAA TCAAGTCCAA GAGCCGATGC TCACTCTGCT TCTAAAAGGC
  GAAAGAGTTA TTGTGGTGTG GGGACATACC CAGATCCTCC TCACTGGGTG GGGACAGCCA
  TGACAACGGT AGGTACTTGC TCTGGTATGG TGTCTGTGGT GGGAAGGAAA CAGATAAGAC
  R
  GGAGACAGAG CCAGCAATGC CAGAGCCTGA CCCATCTACA CTTGGGGACC CCTTTTAAAG
  AATTACACAT ACAGGTGATT ATCTCTCTAA ATCAAGGAAA GGGTTCACAA CTGGTTCCGA
  CTTGATTTGA TTTTTTGTGT ATGAGCATCC TGCTTGTACG TATGTCTGTG TACCATGTGC
  AGGCCTGGTT AGGATAGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45234750	mCV23022173	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss148241307	ENSMUSSNP7221808	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs33083055					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165435495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	1029 bp proximal
Eya2	EYA transcriptional coactivator and phosphatase 2	1457 bp upstream
Rr569954	regulatory region 569954	358 bp proximal
Rr569955	regulatory region 569955	967 bp proximal
Rr569956	regulatory region 569956	1468 bp proximal
Rr569957	regulatory region 569957	1639 bp proximal
Rr569958	regulatory region 569958	1816 bp proximal
Tssr21727	transcription start site region 21727	1434 bp upstream