rs33083364 SNP Detail

Summary

• ID
  rs33083364
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57368200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTC TCTGTAGCCT CGCTGGCCTT
  K
  AATGTGCAGC AGTTCGCCTG CTTCG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39492152	mCV23459037	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss145809632	ENSMUSSNP1613390	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33083364					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57368200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9390	CpG island 9390	1242 bp distal
Cpgi9391	CpG island 9391	377 bp distal
Cpgi9392	CpG island 9392	764 bp proximal
Crb3	crumbs family member 3	383 bp upstream
Rr405393	regulatory region 405393	738 bp downstream
Rr529261	regulatory region 529261	847 bp distal
Rr529262	regulatory region 529262	541 bp proximal
Rr529263	regulatory region 529263	1110 bp proximal
Slc25a23	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	1337 bp upstream
Tssr145365	transcription start site region 145365	443 bp downstream
Tssr145366	transcription start site region 145366	1060 bp upstream
Tssr145367	transcription start site region 145367	1117 bp upstream
Tssr145368	transcription start site region 145368	1153 bp upstream
Tssr145369	transcription start site region 145369	1286 bp upstream
Tssr145370	transcription start site region 145370	1325 bp upstream
Tssr148875	transcription start site region 148875	1343 bp upstream
Tssr148876	transcription start site region 148876	789 bp downstream