rs33084515 SNP Detail

Summary

• ID
  rs33084515
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34575715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGAGCTGA GATCGATTTT TGCAGCCTGG CTAGAGCGAT
  GATCTCTGCA TGGGATTGCA GAGCCTGGCA CGGCCTGGGA GAGGCGGGGC CTGAGAGACC
  S
  GCCTTCTGCT TTCCAGGTTC GCGCTTGCGT GCTGAGGATG GTTTGCTTTT CGGGGTTGGC
  TTGGCTTGCT TCGCTTCTGC CTCCTGGAAA GTCGTTTTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46232914	mCV24921855	ABI	CRAMUS_MOUSE	f	SNP		G					C		G
ss60592235	NES16320149	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G		C	G	C		C	G	C	C		G
ss149092951	ENSMUSSNP6080180	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss322575052	CHEV_8_35171615	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33084515					SNP	G	G	G	G	C	G	C	C	G	C	G	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592235	NES16320149	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34575715 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	within coordinates
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	within coordinates
Tssr80889	transcription start site region 80889	772 bp upstream
Tssr80890	transcription start site region 80890	719 bp upstream
Tssr80891	transcription start site region 80891	73 bp upstream
Tssr80892	transcription start site region 80892	39 bp upstream
Tssr80893	transcription start site region 80893	231 bp downstream