rs33084785 SNP Detail

Summary

• ID
  rs33084785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192341033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTCCCAG AACTCAGGAG
  ACAGAGGACC ACTCTGCTCC AAGCAACCAG TTAAATCTGT CTCCCCAGCC CTGACACTCC
  TGAGCTGGGA GGGGGACCTG AGCTGGGAGG GGGAGACAAG AATAGACTCT GGGGTCTTTA
  AGTCCTTTGC TGGGTGATGC CAGTATGGGG TGGAGGATGA AAACAGATGC TCACAGAAAC
  Y
  GGGGTGCTGG CAAGTAGAGA TGTCACTCAC CCCCCCCCCC AACCATATGC AATCTGAATT
  ATTTGCTCTG CTGCCTTTGA GTAAAGGGGA CATAACCCTC CAGGATTCAC AGGACAGAGG
  GAAACATCCC TCCCCAAGCT CCGTTTGTTT CACACACTAA CCAGAATAAC TAGCTACAAC
  CATTCTACAA GGCCTTGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	MOLF/EiJ	WSB/EiJ
ss46769775	NES10646220	PERLEGEN	MM_PANEL2	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	MOLF/EiJ	WSB/EiJ
rs33084785					SNP	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46769775	NES10646220	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192341033 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426372	regulatory region 426372			1690 bp proximal