rs33085904 SNP Detail

Summary

• ID
  rs33085904
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126046369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACAGCAG GCATCAGGAA
  TGACAAGTGC TTCCTCAGAA GGAAAGGGGG CCAGGGTGGC ATAAAATACC ACGCCCTGTG
  AGCACCCTGT GGACACATGC TCTGCATGGG CTCCCCCGGG GCAGAGAGGT GACAGCTCAC
  CGGCAGGGGG TCGACATAGA GGATGAGGAA GTGGAGGGAC ATGGACAGGC AGATGGAACC
  S
  AGCAGCCAGA TGTTCACCCA GGGTGGCATC CGCAGTAGGG ACTGGTTCTC AGACAGGCTA
  GAACAAAAGG CCAGGCAGAT GGAGAGACAG GGATACAGAG AAAGATGTGG TAAGGCAGAG
  TGGAGGGAGA AGAGAGGCGG GGAGAACATG AAGGCACAGG GCCCACCCAA GTGGACAAGG
  CCTACCTGTT GAGAGCATTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47254096	NES11563267	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33085904					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47254096	NES11563267	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126046369 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	Coding-Synonymous
Rabep2	rabaptin, RAB GTPase binding effector protein 2	1290 bp downstream
Tssr2394	transcription start site region 2394	441 bp downstream
Tssr69022	transcription start site region 69022	1139 bp downstream
Tssr69023	transcription start site region 69023	708 bp upstream
Tssr74663	transcription start site region 74663	1143 bp upstream
Tssr74664	transcription start site region 74664	609 bp upstream
Tssr74665	transcription start site region 74665	283 bp upstream
Tssr74666	transcription start site region 74666	224 bp upstream
Tssr74667	transcription start site region 74667	196 bp upstream
Tssr74668	transcription start site region 74668	within coordinates
Tssr74669	transcription start site region 74669	8 bp downstream
Tssr74670	transcription start site region 74670	244 bp downstream
Tssr74671	transcription start site region 74671	287 bp downstream
Tssr74672	transcription start site region 74672	300 bp downstream
Tssr74673	transcription start site region 74673	445 bp downstream
Tssr74674	transcription start site region 74674	474 bp downstream
Tssr74675	transcription start site region 74675	483 bp downstream
Tssr74676	transcription start site region 74676	698 bp downstream
Tssr74677	transcription start site region 74677	723 bp downstream
Tssr74678	transcription start site region 74678	755 bp downstream
Tssr74679	transcription start site region 74679	779 bp downstream
Tssr74680	transcription start site region 74680	797 bp downstream
Tssr74681	transcription start site region 74681	824 bp downstream
Tssr74682	transcription start site region 74682	838 bp downstream
Tssr74683	transcription start site region 74683	1036 bp downstream
Tssr74684	transcription start site region 74684	1139 bp downstream
Tssr74685	transcription start site region 74685	1165 bp downstream
Tssr74686	transcription start site region 74686	1397 bp downstream
Tssr74687	transcription start site region 74687	1451 bp downstream
Tssr74688	transcription start site region 74688	1555 bp downstream
Tssr74689	transcription start site region 74689	1624 bp downstream