rs33085906 SNP Detail

Summary

• ID
  rs33085906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126046692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGAGAAG AGAGGCGGGG
  AGAACATGAA GGCACAGGGC CCACCCAAGT GGACAAGGCC TACCTGTTGA GAGCATTGCA
  CATCTCGATG GTCACCAACA CAGACAAGGC CATGGTCATG GGCTCGGGGG CCTCAAAGAC
  CTCACAGTCC AGGCCATCGA ATTCAGGGTT GTGCTCAGTG CACTGCATGA AATGAGTCTA
  Y
  GAAGGAAGAG ACAGAAGCCT GAGCTCCACA GAAGCCTTCG GCACACCCTC TCAGGGCCCA
  CCTCCCCAGC CTCCTTCCTA CCAGCTGATG GTAGCTGACA TGAGGCCCGT CCTCTGCATA
  CAAAAACCAC CAGGCAGCTG CTCCTACAGT GGCTGCACCC ACATAGCCTG TGGTGGGGAG
  AAGAGAGGAG CTGGGGTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47254099	NES11563270	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33085906					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47254099	NES11563270	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126046692 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Rabep2	rabaptin, RAB GTPase binding effector protein 2	1613 bp downstream
Tssr2394	transcription start site region 2394	118 bp downstream
Tssr69022	transcription start site region 69022	1462 bp downstream
Tssr69023	transcription start site region 69023	385 bp upstream
Tssr74663	transcription start site region 74663	1466 bp upstream
Tssr74664	transcription start site region 74664	932 bp upstream
Tssr74665	transcription start site region 74665	606 bp upstream
Tssr74666	transcription start site region 74666	547 bp upstream
Tssr74667	transcription start site region 74667	519 bp upstream
Tssr74668	transcription start site region 74668	316 bp upstream
Tssr74669	transcription start site region 74669	302 bp upstream
Tssr74670	transcription start site region 74670	46 bp upstream
Tssr74671	transcription start site region 74671	25 bp upstream
Tssr74672	transcription start site region 74672	8 bp upstream
Tssr74673	transcription start site region 74673	122 bp downstream
Tssr74674	transcription start site region 74674	151 bp downstream
Tssr74675	transcription start site region 74675	160 bp downstream
Tssr74676	transcription start site region 74676	375 bp downstream
Tssr74677	transcription start site region 74677	400 bp downstream
Tssr74678	transcription start site region 74678	432 bp downstream
Tssr74679	transcription start site region 74679	456 bp downstream
Tssr74680	transcription start site region 74680	474 bp downstream
Tssr74681	transcription start site region 74681	501 bp downstream
Tssr74682	transcription start site region 74682	515 bp downstream
Tssr74683	transcription start site region 74683	713 bp downstream
Tssr74684	transcription start site region 74684	816 bp downstream
Tssr74685	transcription start site region 74685	842 bp downstream
Tssr74686	transcription start site region 74686	1074 bp downstream
Tssr74687	transcription start site region 74687	1128 bp downstream
Tssr74688	transcription start site region 74688	1232 bp downstream
Tssr74689	transcription start site region 74689	1301 bp downstream
Tssr74690	transcription start site region 74690	1722 bp downstream
Tssr74691	transcription start site region 74691	1765 bp downstream