rs33085908 SNP Detail

Summary

• ID
  rs33085908
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126046732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCC TGAGCTCCAC AGAAGCCTTC
  R
  GCACACCCTC TCAGGGCCCA CCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47254102	NES11563272	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A	G	A	A		A	G	A	A		A
ss145873527	ENSMUSSNP6667088	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss322450799	CHEV_7_133591074	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33085908					SNP	A	A	A	A	A	G	A	G	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47254102	NES11563272	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126046732 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Rabep2	rabaptin, RAB GTPase binding effector protein 2	1653 bp downstream
Tssr2394	transcription start site region 2394	78 bp downstream
Tssr69022	transcription start site region 69022	1502 bp downstream
Tssr69023	transcription start site region 69023	345 bp upstream
Tssr74663	transcription start site region 74663	1506 bp upstream
Tssr74664	transcription start site region 74664	972 bp upstream
Tssr74665	transcription start site region 74665	646 bp upstream
Tssr74666	transcription start site region 74666	587 bp upstream
Tssr74667	transcription start site region 74667	559 bp upstream
Tssr74668	transcription start site region 74668	356 bp upstream
Tssr74669	transcription start site region 74669	342 bp upstream
Tssr74670	transcription start site region 74670	86 bp upstream
Tssr74671	transcription start site region 74671	65 bp upstream
Tssr74672	transcription start site region 74672	48 bp upstream
Tssr74673	transcription start site region 74673	82 bp downstream
Tssr74674	transcription start site region 74674	111 bp downstream
Tssr74675	transcription start site region 74675	120 bp downstream
Tssr74676	transcription start site region 74676	335 bp downstream
Tssr74677	transcription start site region 74677	360 bp downstream
Tssr74678	transcription start site region 74678	392 bp downstream
Tssr74679	transcription start site region 74679	416 bp downstream
Tssr74680	transcription start site region 74680	434 bp downstream
Tssr74681	transcription start site region 74681	461 bp downstream
Tssr74682	transcription start site region 74682	475 bp downstream
Tssr74683	transcription start site region 74683	673 bp downstream
Tssr74684	transcription start site region 74684	776 bp downstream
Tssr74685	transcription start site region 74685	802 bp downstream
Tssr74686	transcription start site region 74686	1034 bp downstream
Tssr74687	transcription start site region 74687	1088 bp downstream
Tssr74688	transcription start site region 74688	1192 bp downstream
Tssr74689	transcription start site region 74689	1261 bp downstream
Tssr74690	transcription start site region 74690	1682 bp downstream
Tssr74691	transcription start site region 74691	1725 bp downstream