rs33085910 SNP Detail

Summary

• ID
  rs33085910
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126046918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAGAAGC CTTCGGCACA
  CCCTCTCAGG GCCCACCTCC CCAGCCTCCT TCCTACCAGC TGATGGTAGC TGACATGAGG
  CCCGTCCTCT GCATACAAAA ACCACCAGGC AGCTGCTCCT ACAGTGGCTG CACCCACATA
  GCCTGTGGTG GGGAGAAGAG AGGAGCTGGG GTCAGGGCTG ATGAGTTAAG TATCAGGAAG
  R
  CCTCACACAG CTGGAGACAG CTGGCTTTGG GCAGCTTGAA TTGGGAAAAG CTGGTATCAG
  GGACGAGGTT GGTCCCAAAG GCTGGGAAAG GTGGTTGAGT CCCTTCTTGC TTACCCCCAA
  TTGCCATGTA GCGGAAAAAG AGCCAGCCAC TGATAAGAGG CTCCTTGGGA CTCCTGGGGG
  GGCGGTCCAT GATGTCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47254105	NES11563274	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33085910					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47254105	NES11563274	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126046918 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Rabep2	rabaptin, RAB GTPase binding effector protein 2	1839 bp downstream
Tssr2394	transcription start site region 2394	106 bp upstream
Tssr69022	transcription start site region 69022	1688 bp downstream
Tssr69023	transcription start site region 69023	159 bp upstream
Tssr74663	transcription start site region 74663	1692 bp upstream
Tssr74664	transcription start site region 74664	1158 bp upstream
Tssr74665	transcription start site region 74665	832 bp upstream
Tssr74666	transcription start site region 74666	773 bp upstream
Tssr74667	transcription start site region 74667	745 bp upstream
Tssr74668	transcription start site region 74668	542 bp upstream
Tssr74669	transcription start site region 74669	528 bp upstream
Tssr74670	transcription start site region 74670	272 bp upstream
Tssr74671	transcription start site region 74671	251 bp upstream
Tssr74672	transcription start site region 74672	234 bp upstream
Tssr74673	transcription start site region 74673	95 bp upstream
Tssr74674	transcription start site region 74674	67 bp upstream
Tssr74675	transcription start site region 74675	53 bp upstream
Tssr74676	transcription start site region 74676	149 bp downstream
Tssr74677	transcription start site region 74677	174 bp downstream
Tssr74678	transcription start site region 74678	206 bp downstream
Tssr74679	transcription start site region 74679	230 bp downstream
Tssr74680	transcription start site region 74680	248 bp downstream
Tssr74681	transcription start site region 74681	275 bp downstream
Tssr74682	transcription start site region 74682	289 bp downstream
Tssr74683	transcription start site region 74683	487 bp downstream
Tssr74684	transcription start site region 74684	590 bp downstream
Tssr74685	transcription start site region 74685	616 bp downstream
Tssr74686	transcription start site region 74686	848 bp downstream
Tssr74687	transcription start site region 74687	902 bp downstream
Tssr74688	transcription start site region 74688	1006 bp downstream
Tssr74689	transcription start site region 74689	1075 bp downstream
Tssr74690	transcription start site region 74690	1496 bp downstream
Tssr74691	transcription start site region 74691	1539 bp downstream