rs33086340 SNP Detail

Summary

• ID
  rs33086340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89732067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG TGTGATGAAC AATGAACAAG
  R
  GATTCCCCCC CCCAATAATA AAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46232870	mCV24089570	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss145494945	ENSMUSSNP4490220	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33086340					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89732067 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20796	CpG island 20796	995 bp proximal
Gm56831	predicted gene, 56831	343 bp downstream
Rr1386	regulatory region 1386	742 bp distal
Rr366841	regulatory region 366841	within coordinates
Rr406251	regulatory region 406251	380 bp proximal
Tssr78676	transcription start site region 78676	1576 bp downstream
Tssr82368	transcription start site region 82368	1173 bp downstream
Tssr82369	transcription start site region 82369	1201 bp downstream
Tssr82370	transcription start site region 82370	1220 bp downstream
Tssr82371	transcription start site region 82371	1232 bp downstream
Tssr82372	transcription start site region 82372	1258 bp downstream
Tssr82373	transcription start site region 82373	1840 bp downstream