rs33087006 SNP Detail

Summary

• ID
  rs33087006
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126047239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCATGTA GCGGAAAAAG
  AGCCAGCCAC TGATAAGAGG CTCCTTGGGA CTCCTGGGGG GGCGGTCCAT GATGTCCAGG
  TCAGGTGGGT TGAATCCCAG GGCAGTAGCC GGGAGCCCAT CAGTCACCAA GTTCACCCAG
  AGCAGCTGCA CAGGGATCAG AGCCTCAGGC AGCCCCAAGG CTGCTGTCAA GAAGATACTG
  S
  CAGAGGAAGA AAGTCATGCA TTCATTTGTT TCAAGTCCCA TGATCAACCC CCTCAGCCCT
  GGGTTGTTGG TTTTTTTTTC TTCTGGCTGC TCACCAGACC ACCTCGCCCA CATTGGAGGA
  GATGAGGTAG CGGATGAACT GCTTCATGTT GTTGTAGATG GCGCGGCCTT CCTCCACGGC
  AGCCACGATG GTGGAGAAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47254114	NES11563277	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33087006					SNP	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47254114	NES11563277	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126047239 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Tssr2394	transcription start site region 2394	427 bp upstream
Tssr69023	transcription start site region 69023	153 bp downstream
Tssr74664	transcription start site region 74664	1479 bp upstream
Tssr74665	transcription start site region 74665	1153 bp upstream
Tssr74666	transcription start site region 74666	1094 bp upstream
Tssr74667	transcription start site region 74667	1066 bp upstream
Tssr74668	transcription start site region 74668	863 bp upstream
Tssr74669	transcription start site region 74669	849 bp upstream
Tssr74670	transcription start site region 74670	593 bp upstream
Tssr74671	transcription start site region 74671	572 bp upstream
Tssr74672	transcription start site region 74672	555 bp upstream
Tssr74673	transcription start site region 74673	416 bp upstream
Tssr74674	transcription start site region 74674	388 bp upstream
Tssr74675	transcription start site region 74675	374 bp upstream
Tssr74676	transcription start site region 74676	165 bp upstream
Tssr74677	transcription start site region 74677	122 bp upstream
Tssr74678	transcription start site region 74678	101 bp upstream
Tssr74679	transcription start site region 74679	81 bp upstream
Tssr74680	transcription start site region 74680	63 bp upstream
Tssr74681	transcription start site region 74681	37 bp upstream
Tssr74682	transcription start site region 74682	26 bp upstream
Tssr74683	transcription start site region 74683	166 bp downstream
Tssr74684	transcription start site region 74684	269 bp downstream
Tssr74685	transcription start site region 74685	295 bp downstream
Tssr74686	transcription start site region 74686	527 bp downstream
Tssr74687	transcription start site region 74687	581 bp downstream
Tssr74688	transcription start site region 74688	685 bp downstream
Tssr74689	transcription start site region 74689	754 bp downstream
Tssr74690	transcription start site region 74690	1175 bp downstream
Tssr74691	transcription start site region 74691	1218 bp downstream