rs33087008 SNP Detail

Summary

• ID
  rs33087008
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126047257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCAGCC ACTGATAAGA
  GGCTCCTTGG GACTCCTGGG GGGGCGGTCC ATGATGTCCA GGTCAGGTGG GTTGAATCCC
  AGGGCAGTAG CCGGGAGCCC ATCAGTCACC AAGTTCACCC AGAGCAGCTG CACAGGGATC
  AGAGCCTCAG GCAGCCCCAA GGCTGCTGTC AAGAAGATAC TGGCAGAGGA AGAAAGTCAT
  R
  CATTCATTTG TTTCAAGTCC CATGATCAAC CCCCTCAGCC CTGGGTTGTT GGTTTTTTTT
  TCTTCTGGCT GCTCACCAGA CCACCTCGCC CACATTGGAG GAGATGAGGT AGCGGATGAA
  CTGCTTCATG TTGTTGTAGA TGGCGCGGCC TTCCTCCACG GCAGCCACGA TGGTGGAGAA
  GTTATCATCG GCCAGTACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47254117	NES11563278	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33087008					SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47254117	NES11563278	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126047257 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Tssr2394	transcription start site region 2394	445 bp upstream
Tssr69023	transcription start site region 69023	171 bp downstream
Tssr74664	transcription start site region 74664	1497 bp upstream
Tssr74665	transcription start site region 74665	1171 bp upstream
Tssr74666	transcription start site region 74666	1112 bp upstream
Tssr74667	transcription start site region 74667	1084 bp upstream
Tssr74668	transcription start site region 74668	881 bp upstream
Tssr74669	transcription start site region 74669	867 bp upstream
Tssr74670	transcription start site region 74670	611 bp upstream
Tssr74671	transcription start site region 74671	590 bp upstream
Tssr74672	transcription start site region 74672	573 bp upstream
Tssr74673	transcription start site region 74673	434 bp upstream
Tssr74674	transcription start site region 74674	406 bp upstream
Tssr74675	transcription start site region 74675	392 bp upstream
Tssr74676	transcription start site region 74676	183 bp upstream
Tssr74677	transcription start site region 74677	140 bp upstream
Tssr74678	transcription start site region 74678	119 bp upstream
Tssr74679	transcription start site region 74679	99 bp upstream
Tssr74680	transcription start site region 74680	81 bp upstream
Tssr74681	transcription start site region 74681	55 bp upstream
Tssr74682	transcription start site region 74682	44 bp upstream
Tssr74683	transcription start site region 74683	148 bp downstream
Tssr74684	transcription start site region 74684	251 bp downstream
Tssr74685	transcription start site region 74685	277 bp downstream
Tssr74686	transcription start site region 74686	509 bp downstream
Tssr74687	transcription start site region 74687	563 bp downstream
Tssr74688	transcription start site region 74688	667 bp downstream
Tssr74689	transcription start site region 74689	736 bp downstream
Tssr74690	transcription start site region 74690	1157 bp downstream
Tssr74691	transcription start site region 74691	1200 bp downstream