rs33087011 SNP Detail

Summary

• ID
  rs33087011
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126047360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCACCAAG TTCACCCAGA
  GCAGCTGCAC AGGGATCAGA GCCTCAGGCA GCCCCAAGGC TGCTGTCAAG AAGATACTGG
  CAGAGGAAGA AAGTCATGCA TTCATTTGTT TCAAGTCCCA TGATCAACCC CCTCAGCCCT
  GGGTTGTTGG TTTTTTTTTC TTCTGGCTGC TCACCAGACC ACCTCGCCCA CATTGGAGGA
  R
  ATGAGGTAGC GGATGAACTG CTTCATGTTG TTGTAGATGG CGCGGCCTTC CTCCACGGCA
  GCCACGATGG TGGAGAAGTT ATCATCGGCC AGTACCATTT CAGAGGCCGT CTTAGCCACA
  GCAGTACCAG ATCCCATGGC AATGCCAATC TCGGCCTTCT TCAGAGCAGG GGCATCATTG
  ACACCATCCC CTGTCTGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47254120	NES11563279	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33087011					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47254120	NES11563279	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126047360 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Tssr2394	transcription start site region 2394	548 bp upstream
Tssr69023	transcription start site region 69023	274 bp downstream
Tssr74664	transcription start site region 74664	1600 bp upstream
Tssr74665	transcription start site region 74665	1274 bp upstream
Tssr74666	transcription start site region 74666	1215 bp upstream
Tssr74667	transcription start site region 74667	1187 bp upstream
Tssr74668	transcription start site region 74668	984 bp upstream
Tssr74669	transcription start site region 74669	970 bp upstream
Tssr74670	transcription start site region 74670	714 bp upstream
Tssr74671	transcription start site region 74671	693 bp upstream
Tssr74672	transcription start site region 74672	676 bp upstream
Tssr74673	transcription start site region 74673	537 bp upstream
Tssr74674	transcription start site region 74674	509 bp upstream
Tssr74675	transcription start site region 74675	495 bp upstream
Tssr74676	transcription start site region 74676	286 bp upstream
Tssr74677	transcription start site region 74677	243 bp upstream
Tssr74678	transcription start site region 74678	222 bp upstream
Tssr74679	transcription start site region 74679	202 bp upstream
Tssr74680	transcription start site region 74680	184 bp upstream
Tssr74681	transcription start site region 74681	158 bp upstream
Tssr74682	transcription start site region 74682	147 bp upstream
Tssr74683	transcription start site region 74683	45 bp downstream
Tssr74684	transcription start site region 74684	148 bp downstream
Tssr74685	transcription start site region 74685	174 bp downstream
Tssr74686	transcription start site region 74686	406 bp downstream
Tssr74687	transcription start site region 74687	460 bp downstream
Tssr74688	transcription start site region 74688	564 bp downstream
Tssr74689	transcription start site region 74689	633 bp downstream
Tssr74690	transcription start site region 74690	1054 bp downstream
Tssr74691	transcription start site region 74691	1097 bp downstream
Tssr74692	transcription start site region 74692	1964 bp downstream
Tssr74693	transcription start site region 74693	1990 bp downstream